Research Papers

1. Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of diVerent functional categories

Shankar R, Chaurasia A, Ghosh B, Chekmenev D, Cheremushkin E, Kel A, Mukerji M.

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2. Genetic landscape of the people of India: a canvas for disease gene exploration

Indian Genome Variation Consortium

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3. Mapping human genetic diversity in Asia

HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, et al.

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4. IGVBrowser–a genomic variation resource from diverse Indian populations

Narang A, Roy RD, Chaurasia A, Mukhopadhyay A, Mukerji M

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5. Population diversity and adaptive evolution in keratinization genes: impact of environment in shaping skin phenotypes

Gautam P, Chaurasia A, Bhattacharya A, Grover R; Indian Genome Variation Consortium., Mukerji M, Natarajan VT

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6. Whole exome sequencing unveils a frameshift mutation in CNGB3 for cone dystrophy: A case report of an Indian family

Gupta S, Chaurasia A, Pathak E, Mishra R, Chaudhry VN, Chaudhry P, Mukherjee A, Mutsuddi M.

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7. Genetic heterogeneity in Van der Woude syndrome: identification of NOL4 and IRF6 haplotype from the noncoding region as candidates in two families

Kumari PK, Ali A, Singh SK, Chaurasia A, Raman R.

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8. Targeted Exome Sequencing Integrated with Clinicopathological Information Reveals Novel and Rare Mutations in Atypical, Suspected and Unknown Cases of Alport Syndrome or Proteinuria

Rajshekhar Chatterjee, Mary Hoffman, Paul Cliften, Surya Seshan, Helen Liapis, and Sanjay Jain

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9. Traditional and targeted exome sequencing reveals common, rare and novel deleterious variants in RET signaling complex in a cohort of living US patients with urinary tract malformations.

Rajshekhar Chatterjee, Enrique Ramos, Mary Hoffman, Jessica VanWinkle, Daniel R. Martin, Thomas Keefe Davis, Masato Hoshi, Stanley Paul Hmiel, Anne Beck, Keith Hruska, Doug Coplen, Helen Liapis, Robi Mitra, Todd Druley, Paul Austin, and Sanjay Jain

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10. Monocyte  chemotactic protein (MCP3) promoter polymorphism is associated with atopic asthma in the Indian population

Jyotsna   Batra, Sudipta Das, Rajshekhar   Chatterjee,   Sunandini Chandra and Balaram Ghosh.

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11. Expression profiles of podocytes exposed to high glucose reveal new insights into early diabetic glomerulopathy

Sanjay Jain, Laura De Petris, Masato Hoshi, Shreeram Akilesh, Rajshekhar Chatterjee and Helen Liapis

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12. A common exonic variant of Interleukin21 confers susceptibility to atopic asthma.

Rajshekhar Chatterjee, Jyotsna Batra and Balaram Ghosh

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13. Genetic association of Acidic Mammalian Chitinase with atopic asthma and serum total immunoglobin E levels.

Rajshekhar Chatterjee, Jyotsna Batra, Surendra Kumar Sharma, Balaram Ghosh

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14. Interleukin-21 gene polymorphisms are associated with atopic asthma, serum total IgE and serum IL-21 levels

Rajshekhar Chatterjee, Jyotsna Batra and Balaram Ghosh.

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15. Frequency-dependent response of Chromobacterium violaceum to sonic stimulation, and altered gene expression associated with enhanced violacein production at 300 Hz

Chinmayi Joshi, Pooja Patel, Abhishek Singh, Jinal Sukhadiya, Vidhi Shah, Vijay Kothari

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16. Whole Genome Sequencing of Micrococcus luteus Strain Modasa, of Indian Origin

Ghosh. A., Chaudhary. S., Apurva. S., Tiwari. T., Gupta. S., Singh. A.

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17. Identification of Soil Enriched Microorganism using 16s rDNA analysis for crop productivity.

Gupta. S., Singh. A., Chaudhary. P., Pandey. M., Singh. K.M., Chikara. S.K.

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18. Genetic diversity and identification of variety-specific AFLP markers in fenugreek (Trigonella foenum-gracium).

Kumar. V., Srivastava. N., Singh. A., Vyas. M.K., Gupta. S., Katudia. K., Vaidya. K., Chaudhary. S., Ghosh. A., Chikara. S.K

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19. Characterization of downy mildew resistant and susceptible genotypes of pearl millet (Pennisetum gaucum L.) using SDS-PAGE and RAPD markers

Sapre. S., Singh A., Saripalli. G., Patil. V., Talati. J.G.

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20. Assessment of Relationship between Downy Mildew disease resistance and biochemical markers in pearl millet (Pennisetum glaucum L.)

Sapre. S., Singh. A., Patil, V., Kumar. R., Rojasara. Y.M., Saripalli. G., Talati. J.G.

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21. Small RNAs regulate the biocontrol property of fluorescent Pseudomonas strain

A Upadhyay, M Kochar, A Upadhyay, S Tripathy, MV Rajam, S Srivastava

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22. Partial Saturation of Menaquinone in Mycobacterium tuberculosis:  Function and Essentiality of a Novel Reductase, MenJ.

Ashutosh Upadhyay, Fabio L. Fontes, Mercedes Gonzalez-Juarrero,  Michael R. McNeil, Debbie C. Crans, Mary Jackson and Dean C. Crick

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23. Novel Insights into the Mechanism of Inhibition of MmpL3, a Target of Multiple Pharmacophores in Mycobacterium tuberculosis.

Li,Wei‎; Upadhyay, Ashutosh‎; Fontes, et al

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24. Oxidative phosphorylation—A potential drug target in Mycobacterium tuberculosis.

DC Crick, A Upadhyay, F Fontes, MR McNeil, M Jackson

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25. Multi-Target Drug Discovery for Tuberculosis and Other Infectious Diseases.

Kai Li, Ashutosh Upadhyay*, et al

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26. “Indole-3-acetic acid biosynthesis in the biocontrol strain Pseudomonas fluorescens Psd and plant growth regulation by hormone over-expression”.

Mandira Kocher, Ashutosh Upadhyay and Sheela Srivastava

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27. Phinazine-1-carboxylic acid is a major contributor to biocontrol function than Pyrrolnitrin in Pseudomonas fluorescens strains Psd,

Ashutosh Upadhyay and Sheela Srivastava

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28. “Evaluation of multiple plant growth promoting property of an isolate of Pseudomonas fluorescens strain Psd”. I

Ashutosh Upadhyay and Sheela Srivastava

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29. “Characterization of a natural isolate of Pseudomonas fluorescens strain Psd for its biocontrol properties”

A Upadhyay and S Srivastava

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30. “Production, purification, and characterization of lipase from thermophilic and alkaliphilic Bacillus coagulans BTS-3”

Satyendra Kumar, Khyodano Kikon, Ashutosh Upadhyay, Shamsher S. Kanwar and Reena Gupta

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31. Mutagenesis in the bacterial genome: Knocking down the desired gene function. In Current trends in Biotechnology, Principles and applications.

Upadhyay A and Upadhyay R

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32. High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub).

Rawal, Hukam C., Shrawan Kumar, Amitha Mithra SV, Amolkumar U. Solanke, Deepti Nigam, Swati Saxena, Anshika Tyagi et al.

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33. Oscillating transcriptome during rice-Magnaporthe interaction.

Sharma, T. R., Alok Das, Shallu Thakur, B. N. Devanna, Pankaj Kumar Singh, Priyanka Jain, Joshitha Vijayan, and Shrawan Kumar.

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34. Population differentiation of wheat leaf rust fungus Puccinia triticina in South Asia.

Prasad, Pramod, S. C. Bhardwaj, O. P. Gangwar, Subodh Kumar, Hanif Khan, Shrawan Kumar, H. C. Rawal, and T. R. Sharma.

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35. “Start Codon Targeted (SCoT) marker reveals genetic diversity of Dendrobium nobile Lindl., an endangered medicinal orchid species.”

Bhattacharyya, Paromik, Suman Kumaria, Shrawan Kumar, and Pramod Tandon.

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36. “SPAR methods coupled with seed-oil content revealed intra-specific natural variation in Jatropha curcas L. from Northeast India.”

Kumar, Shrawan, Suman Kumaria, and Pramod Tandon.

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37. Genetic variation and gene flow estimation of Nepenthes khasiana Hook. F-A threatened insectivorous plant of India as revealed by RAPD markers.

Nongrum, Iaibadaiahun, Shrawan Kumar, Suman Kumaria, and Pramod Tandon.

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38. Genetic diversity assessment of Jatropha curcas L. germplasm from Northeast India.

Kumar, Shrawan, Suman Kumaria, Santosh Kumar Sharma, Satyawada Rama Rao, and Pramod Tandon.

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39. Genetic diversity and gene flow estimation in Prosopis cineraria (L.) Druce: A key stone tree species of Indian Thar Desert.

Sharma, Santosh Kumar, Shrawan Kumar, Deepika Rawat, Suman Kumaria, Arun Kumar, and Satyawada Rama Rao.

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40. Single primer amplification reaction (SPAR) reveals intra-specific natural variation in Prosopis cineraria (L.) Druce.

Sharma, Santosh Kumar, Deepika Rawat, Shrawan Kumar, Arun Kumar, Suman Kumaria, and Rama Rao Satyawada.

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41. “Micropropagation of Ilex khasiana, a critically endangered and endemic holly of Northeast India.”

Dang, Jiten Chandra, Suman Kumaria, Shrawan Kumar, and Pramod Tandon

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42. Efficient in vitro plant regeneration protocol from leaf explant of Jatropha curcas L—a promising biofuel plant.

Kumar, Shrawan, Suman Kumaria, and Pramod Tandon

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43. Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy

Meraj Ahmad, Anubhav Sinha, Sreya Ghosh, Vikrant Kumar, Sonia Davila, Chittaranjan S. Yajnik & Giriraj R. Chandak;

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44. Genetic Landscape of the People of India: a Canvas for Disease Gene Exploration.

Brahmachari SK….Chatterjee R et al

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