Research Papers

S. No. Title of research paper PUBMED_ID Journal Year Author List Topic URL
1 Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of diVerent functional categories 17375324 Molecular Genetics and Genomics 2007 Shankar R, Chaurasia A, Ghosh B, Chekmenev D, Cheremushkin E, Kel A, Mukerji M. Non-coding DNA Biology https://www.ncbi.nlm.nih.gov/pubmed/17375324
2 Genetic landscape of the people of India: a canvas for disease gene exploration 18560169 Journal of Genetics 2008 Indian Genome Variation Consortium Genotyping https://www.ncbi.nlm.nih.gov/pubmed/18560169
3 Mapping human genetic diversity in Asia 20007900 Science 2009 HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J,
Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J,
Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H,
Gojobori T, Han J, Ho SF, Hoh BP, et al.
Genotyping https://www.ncbi.nlm.nih.gov/pubmed/20007900
4 IGVBrowser–a genomic variation resource from diverse Indian populations 20843867 Database: The Journal of Biological Databases and Curation 2010 Narang A, Roy RD, Chaurasia A, Mukhopadhyay A, Mukerji M Genotyping database https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2942067/
5 Population diversity and adaptive evolution in keratinization genes: impact of environment in shaping skin phenotypes 25534032 Molecuar Biology and Evolution 2014 Gautam P, Chaurasia A, Bhattacharya A, Grover R; Indian Genome Variation Consortium., Mukerji M, Natarajan VT Evolutionary adaption https://www.ncbi.nlm.nih.gov/pubmed/25534032
6 Whole exome sequencing unveils a frameshift mutation in CNGB3 for cone dystrophy: A case report of an Indian family 28746191 Medicine 2017 Gupta S, Chaurasia A, Pathak E, Mishra R, Chaudhry VN, Chaudhry P, Mukherjee A, Mutsuddi M. NGS https://www.ncbi.nlm.nih.gov/pubmed/28746191
7 Genetic heterogeneity in Van der Woude syndrome: identification of NOL4 and IRF6 haplotype from the noncoding region as candidates in two families 29666346 Journal of Genetics 2018 Kumari PK, Ali A, Singh SK, Chaurasia A, Raman R. Clinical https://www.ncbi.nlm.nih.gov/pubmed/29666346
8 Targeted Exome Sequencing Integrated with Clinicopathological Information Reveals Novel and Rare Mutations in Atypical, Suspected and Unknown Cases of Alport Syndrome or Proteinuria 24130771 PLoS One 2013 Rajshekhar Chatterjee, Mary Hoffman, Paul Cliften, Surya Seshan, Helen Liapis, and Sanjay Jain Clinical, Complex Diseases https://www.ncbi.nlm.nih.gov/pubmed/24130771
9 Traditional and targeted exome sequencing reveals common, rare and novel deleterious variants in RET signaling complex in a cohort of living US patients with urinary tract malformations. 22729463 Human Genetics 2012 Rajshekhar Chatterjee, Enrique Ramos, Mary Hoffman, Jessica VanWinkle, Daniel R. Martin, Thomas Keefe Davis, Masato Hoshi, Stanley Paul Hmiel, Anne Beck, Keith Hruska, Doug Coplen, Helen Liapis, Robi Mitra, Todd Druley, Paul Austin, and Sanjay Jain Clinical, NGS https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551468/
10 Monocyte chemotactic protein (MCP3) promoter polymorphism is associated with atopic asthma in the Indian population 21388664 Journal of Allergy and Clinical Immunology 2011 Jyotsna Batra, Sudipta Das, Rajshekhar Chatterjee, Sunandini Chandra and Balaram Ghosh. Immunology https://www.ncbi.nlm.nih.gov/pubmed/21388664
11 Expression profiles of podocytes exposed to high glucose reveal new insights into early diabetic glomerulopathy 21102505 Laboratory Investigation 2011 Sanjay Jain, Laura De Petris, Masato Hoshi, Shreeram Akilesh, Rajshekhar Chatterjee and Helen Liapis Clinical https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068212/
12 A common exonic variant of Interleukin21 confers susceptibility to atopic asthma. 18802358 International Archives of Allergy and Immunology 2009 Rajshekhar Chatterjee, Jyotsna Batra and Balaram Ghosh Immunology https://www.ncbi.nlm.nih.gov/pubmed/18802358?dopt=Abstract
13 Genetic association of Acidic Mammalian Chitinase with atopic asthma and serum total immunoglobin E levels. 18602573 Journal of Allergy and Clinical Immunology 2008 Rajshekhar Chatterjee, Jyotsna Batra, Surendra Kumar Sharma, Balaram Ghosh Immunology https://www.ncbi.nlm.nih.gov/pubmed/18602573
14 Interleukin-21 gene polymorphisms are associated with atopic asthma, serum total IgE and serum IL-21 levels 18802358 International archives of Allergy and Immunology 2008 Rajshekhar Chatterjee, Jyotsna Batra and Balaram Ghosh. Immunology https://www.ncbi.nlm.nih.gov/pubmed/18802358
15 Frequency-dependent response of Chromobacterium violaceum to sonic stimulation, and altered gene expression associated with enhanced violacein production at 300 Hz 2017 Chinmayi Joshi, Pooja Patel, Abhishek Singh, Jinal Sukhadiya, Vidhi Shah, Vijay Kothari Molucular Biology/Microbiology/NGS https://www.biorxiv.org/content/early/2017/01/04/098186
16 Whole Genome Sequencing of Micrococcus luteus Strain Modasa, of Indian Origin 23516205 Genome Announcements 2013 Ghosh. A., Chaudhary. S., Apurva. S., Tiwari. T., Gupta. S., Singh. A. Microbiology/NGS http://genomea.asm.org/content/1/2/e00076-13.full
17 Identification of Soil Enriched Microorganism using 16s rDNA analysis for crop productivity. Current trends in biotechnology and pharmacy. 2015 Gupta. S., Singh. A., Chaudhary. P., Pandey. M., Singh. K.M., Chikara. S.K. Molucular Biology/Microbiology http://web.b.ebscohost.com/abstract?direct=true&profile=ehost&scope=site&authtype=crawler&jrnl=09738916&AN=99202171&h=CTfW8cG7HTH6jdoicdsiXY6u%2bV9nzJlwjR8GwYnOt1ak4Gvqx%2fEpbjbal0jbFDzxzR5QzOKrMewgGJyNfZSspg%3d%3d&crl=c&resultNs=AdminWebAuth&resultLocal=ErrCrlNotAuth&crlhashurl=login.aspx%3fdirect%3dtrue%26profile%3dehost%26scope%3dsite%26authtype%3dcrawler%26jrnl%3d09738916%26AN%3d99202171
18 Genetic diversity and identification of variety-specific AFLP markers in fenugreek (Trigonella foenum-gracium). African Journal of Biotechnology 2012 Kumar. V., Srivastava. N., Singh. A., Vyas. M.K., Gupta. S., Katudia. K., Vaidya. K., Chaudhary. S., Ghosh. A., Chikara. S.K Molecular Biology http://www.academicjournals.org/article/article1380814438_Kumar%20et%20al.pdf
19 Characterization of downy mildew resistant and susceptible genotypes of pearl millet (Pennisetum gaucum L.) using SDS-PAGE and RAPD markers Agricultural Science Digest 2014 Sapre. S., Singh A., Saripalli. G., Patil. V., Talati. J.G. Biochemistry/Molecular Biology https://s3.amazonaws.com/academia.edu.documents/37757541/asd-34-3-002_1.pdf?AWSAccessKeyId=AKIAIWOWYYGZ2Y53UL3A&Expires=1524562894&Signature=R%2BqRd48ApgZJuVAVBoGFUYFQnNY%3D&response-content-disposition=inline%3B%20filename%3DCHARACTERIZATION_OF_DOWNY_MILDEW_RESISTA.pdf
20 Assessment of Relationship between Downy Mildew disease resistance and biochemical markers in pearl millet (Pennisetum glaucum L.) Journal of Agricultural Biochemistry 2012 Sapre. S., Singh. A., Patil, V., Kumar. R., Rojasara. Y.M., Saripalli. G., Talati. J.G. Biochemistry/Molecular Biology https://scholar.google.co.in/citations?hl=en&user=_oft8kMAAAAJ&view_op=list_works&citft=1&citft=2&citft=3&email_for_op=abhishek%40premaslifesciences.com&gmla=AJsN-F6cQ4STajLGwyeKHxrmjecVG24jOOo42IiawFWRcIyWh_E8MQgLnz5AltDDoKO3rAVx2Z6v_bdiIDXsCPL4_cQLmTsFLsCHlnvTDeGtL_JxPknCuKuPtbPKmy962Q04SKhQimSgKBKS5h1hrj7ajtjuUYVbITOxTnjWhp_7TPHJVsFrCBEbAfE8kKAMdLeRVpNPBIa_RSMaBftU58UK2BOPpWVyK6-cgWJNdrfzLFrSeLWvaetvtWNl8BJnfkQ5BlXYFtF7
21 Small RNAs regulate the biocontrol property of fluorescent Pseudomonas strain 28164793 Microbiological Research 2017 A Upadhyay, M Kochar, A Upadhyay, S Tripathy, MV Rajam, S Srivastava Molecular Biology https://www.ncbi.nlm.nih.gov/pubmed/28164793
22 Partial Saturation of Menaquinone in Mycobacterium tuberculosis: Function and Essentiality of a Novel Reductase, MenJ. 26436137 American Chemical Society Central Science 2015 Ashutosh Upadhyay, Fabio L. Fontes, Mercedes Gonzalez-Juarrero, Michael R. McNeil, Debbie C. Crans, Mary Jackson and Dean C. Crick Biochemistry/ Drug Discovery https://www.ncbi.nlm.nih.gov/pubmed/26436137
23 Novel Insights into the Mechanism of Inhibition of MmpL3, a Target of Multiple Pharmacophores in Mycobacterium tuberculosis. 25136022 Antimicrobial Agents and Chemotherapy 2014 Li,Wei‎; Upadhyay, Ashutosh‎; Fontes, et al Drug Discovery https://www.ncbi.nlm.nih.gov/pubmed/25136022
24 Oxidative phosphorylation—A potential drug target in Mycobacterium tuberculosis. BBA-Bioenergetics 2014 DC Crick, A Upadhyay, F Fontes, MR McNeil, M Jackson Drug Discovery https://www.infona.pl/resource/bwmeta1.element.elsevier-a4afd23e-f327-333d-bb67-acdc1d6ccfc2
25 Multi-Target Drug Discovery for Tuberculosis and Other Infectious Diseases. 4568559 Journal of Medicinal Chemistry, 2014 Kai Li, Ashutosh Upadhyay*, et al Biochemistry https://www.ncbi.nlm.nih.gov/pubmed/24568559
26 “Indole-3-acetic acid biosynthesis in the biocontrol strain Pseudomonas fluorescens Psd and plant growth regulation by hormone over-expression”. 21397014 Research in Microbiology 2011 Mandira Kocher, Ashutosh Upadhyay and Sheela Srivastava Microbiology/ Molecular Biology https://www.ncbi.nlm.nih.gov/pubmed/21397014
27 Phinazine-1-carboxylic acid is a major contributor to biocontrol function than Pyrrolnitrin in Pseudomonas fluorescens strains Psd, 20813512 Microbiological Research 2011 Ashutosh Upadhyay and Sheela Srivastava Microbiology/ Molecular Biology https://www.ncbi.nlm.nih.gov/pubmed/20813512
28 “Evaluation of multiple plant growth promoting property of an isolate of Pseudomonas fluorescens strain Psd”. I 20882763 Indian Journal of Experimental Biology 2010 Ashutosh Upadhyay and Sheela Srivastava Microbiology https://www.ncbi.nlm.nih.gov/pubmed/20882763
29 “Characterization of a natural isolate of Pseudomonas fluorescens strain Psd for its biocontrol properties” 18565138 Letters in Applied Microbiology 2008 A Upadhyay and S Srivastava Microbiology https://www.ncbi.nlm.nih.gov/pubmed/18565138
30 “Production, purification, and characterization of lipase from thermophilic and alkaliphilic Bacillus coagulans BTS-3” 15802219 Protein Expression and Purification 2005 Satyendra Kumar, Khyodano Kikon, Ashutosh Upadhyay, Shamsher S. Kanwar and Reena Gupta Biotechnology/ Protein biology https://www.ncbi.nlm.nih.gov/pubmed/15802219
31 Mutagenesis in the bacterial genome: Knocking down the desired gene function. In Current trends in Biotechnology, Principles and applications. LAP Lambert Academic Publishing GmbH & Co.KG. Heinrich-Bocking-Str 6-8, 66121 Sarbrucken Germany. 290-300. (ISBN 978-3-659-15773-8). 2012 Upadhyay A and Upadhyay R Molecular Biology/ Biotechnology https://www.researchgate.net/publication/279286173_Current_trends_in_Biotechnology_Principles_and_applications
32 High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub). Genes 8 2017 Rawal, Hukam C., Shrawan Kumar, Amitha Mithra SV, Amolkumar U. Solanke, Deepti Nigam, Swati Saxena, Anshika Tyagi et al. Plant- Genomics http://www.mdpi.com/2073-4425/8/11/313
33 Oscillating transcriptome during rice-Magnaporthe interaction. Curr. Issues Mol. Biol 2016 Sharma, T. R., Alok Das, Shallu Thakur, B. N. Devanna, Pankaj Kumar Singh, Priyanka Jain, Joshitha Vijayan, and Shrawan Kumar. Plant- Microbe Interaction https://www.caister.com/cimb/abstracts/v19/99.html
34 Population differentiation of wheat leaf rust fungus Puccinia triticina in South Asia. CURRENT SCIENCE 2017 Prasad, Pramod, S. C. Bhardwaj, O. P. Gangwar, Subodh Kumar, Hanif Khan, Shrawan Kumar, H. C. Rawal, and T. R. Sharma. Fungal-Population genetics http://www.currentscience.ac.in/Volumes/112/10/2073.pdf
35 “Start Codon Targeted (SCoT) marker reveals genetic diversity of Dendrobium nobile Lindl., an endangered medicinal orchid species.” Gene 2013 Bhattacharyya, Paromik, Suman Kumaria, Shrawan Kumar, and Pramod Tandon. Plant-Population genetics https://www.sciencedirect.com/science/article/pii/S0378111913010044
36 “SPAR methods coupled with seed-oil content revealed intra-specific natural variation in Jatropha curcas L. from Northeast India.” biomass and bioenergy 2013 Kumar, Shrawan, Suman Kumaria, and Pramod Tandon. Plant-Population genetics https://www.sciencedirect.com/science/article/pii/S0961953413001554
37 Genetic variation and gene flow estimation of Nepenthes khasiana Hook. F-A threatened insectivorous plant of India as revealed by RAPD markers. Journal of Crop Science and Biotechnology 2012 Nongrum, Iaibadaiahun, Shrawan Kumar, Suman Kumaria, and Pramod Tandon. Plant-Population genetics https://link.springer.com/article/10.1007/s12892-011-0070-y
38 Genetic diversity assessment of Jatropha curcas L. germplasm from Northeast India. biomass and bioenergy 2011 Kumar, Shrawan, Suman Kumaria, Santosh Kumar Sharma, Satyawada Rama Rao, and Pramod Tandon. Plant-Population genetics https://www.sciencedirect.com/science/article/pii/S0961953411002273
39 Genetic diversity and gene flow estimation in Prosopis cineraria (L.) Druce: A key stone tree species of Indian Thar Desert. Biochemical systematics and ecology 2011 Sharma, Santosh Kumar, Shrawan Kumar, Deepika Rawat, Suman Kumaria, Arun Kumar, and Satyawada Rama Rao. Plant-Population genetics https://www.sciencedirect.com/science/article/pii/S0305197810002309
40 Single primer amplification reaction (SPAR) reveals intra-specific natural variation in Prosopis cineraria (L.) Druce. Trees 2011 Sharma, Santosh Kumar, Deepika Rawat, Shrawan Kumar, Arun Kumar, Suman Kumaria, and Rama Rao Satyawada. Plant-Population genetics https://link.springer.com/article/10.1007/s00468-010-0455-4
41 “Micropropagation of Ilex khasiana, a critically endangered and endemic holly of Northeast India.” AoB Plants 2011 Dang, Jiten Chandra, Suman Kumaria, Shrawan Kumar, and Pramod Tandon Plant Tissue Culture https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129536/
42 Efficient in vitro plant regeneration protocol from leaf explant of Jatropha curcas L—a promising biofuel plant. Journal of plant biochemistry and biotechnology 2010 Kumar, Shrawan, Suman Kumaria, and Pramod Tandon Plant Tissue Culture https://link.springer.com/article/10.1007/BF03263356
43 Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy Scientific Reports 2017 Meraj Ahmad, Anubhav Sinha, Sreya Ghosh, Vikrant Kumar, Sonia Davila, Chittaranjan S. Yajnik & Giriraj R. Chandak; Population Genetics https://www.nature.com/articles/s41598-017-06905-6
44 Genetic Landscape of the People of India: a Canvas for Disease Gene Exploration. 18560169 Journal of Genetics 2008 Brahmachari SK….Chatterjee R et al Genetics https://www.ncbi.nlm.nih.gov/pubmed/18560169